News 2023
ImageRICAM Workshop Mathematical Methods in Medicine

From November 28th until December 1st took place in Linz the Workshop in modeling and simulation of ablation therapies in medicine at the Johann Radon Institute for Computational and Applied Mathematics (RICAM) of the Austrian Academy of Sciences. During the week, our scientist Axel Loewe and Carmen Martinez had the opportunity to present their work and meet other successful researchers in the field.

ImageVisiting Professor at IBT

Prof. Elena De Momi, from Politecnico di Milano University (Italy), hasVisiting Professor at IBT
joined the IBT for 2 months, sponsored by the International Excellence Grants of KIT. Prof. De Momi is renown in the field of Medical Robotics, Computer Vision and Artificial Intelligence. She will work with the group of Prof. Francesca Spadea to develop an explainable artificial intelligence-based framework to predict the surgical outcome of patients affected from late-stage ovarian cancer.

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ImageKIT Podcast: Localization through AI

A research project at the Karlsruhe Institute of Technology relies on artificial intelligence to localize the origin of heart palpitations based solely on a standard ECGS.

 

To KIT Campus Report Podcast (German)

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ImageIBT at BMT2023

From September 26 to September 28 the IBT took part at the BMT2023 (“57th Annual Conference of the German Society for Biomedical Engineering) in Duisburg. Christian Götz won the first place in the student’s competition and Laura Unger was honored with the first prize in the Klee Award for her PhD thesis.

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ImageCinC 2023

With five members and three former members of our Cardiac Modeling Group, we participated in this year’s 50thedition of the Computing in Cardiology conference in Atlanta, USA which took place from October 1st to 4th. After the Sunday symposium of the conference, which put special attention on the impact of racism and sexism on health, we presented some of our most recent results. We are proud of Carmen Martínez who was awarded as a semi-finalist of the Young Investigator Award and our former visitor Albert Dasí who made it to the finalists. Congrats, Carmen and Albert! We are looking forward to hosting the 51st edition of the CinC next year in Karlsruhe.

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ImageMulti-modal substrate characterization to guide atrial-fibrillation treatment

Together with clinicians in Freiburg and industrial partners in Barcelona, we analyzed differences in atrial substrate localization using late gadolinium enhancement-magnetic resonance imaging (LGE-MRI), electrogram voltage, and conduction velocity. A newly proposed LGE-MRI analysis method increases coherence but discordances exist.

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LogoPresentation at the 10th International Conference on Computational Bioengineering

From September 20-22, 2023, the 10th edition of this international conference was held in Vienna, Austria. The IBT was represented with a presentation on Electro-mechanical modeling and simulation of the human heart in the mini-symposium Continuum biomechanics of active biological systems.

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ImageSimulated Cardiac Excitation Patterns and Their Electrograms

As a contribution to the FIMH conference, using simulations, we investigated abnormal excitation patterns in the atrium and their electrograms. In contrast to existing studies, we here considered the curvature, different wall thicknesses, as well as electric heterogeneity in a realistic right-atrial geometry.

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ImageLarge synthetic ECG dataset for machine learning

Together with researchers from the Medical University of Graz, PTB Berlin and King's College London, we have published a dataset of 16,900 synthetic ECGs. The ECGs have been generated by detailed computer simulations that allow each ECG signal to be traced back to unique model parameters with biological meaning.

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ImageMachine learning: Artificial neural networks localize heart palpitations

Extra heartbeats from the main chambers of the heart, so-called ventricular extrasystoles, can be related to serious diseases. Researchers at the Karlsruhe Institute of Technology (KIT) use machine learning to determine the origin of the extrasystoles non-invasively.

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BildIBT-Prototera agreement for PhD fellowships

The IBT and Prototera Association (Portugal) established an agreement for 4-year PhD fellowships funded by the Portuguese Government. Students who are interested in doctoral research projects in the field of Image Guidance in Proton Therapy can contact Prof. Francesca Spadea mf.spadea@kit.edu. The 4 year project will be conducted in joint collaboration with the University “Instituto Superior Técnico” of Lisbon.

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ImafgePipeline for creating digital twins of the heart

Our latest paper describes a methodology to generate anatomical and functional atrial digital twins personalized models from imaging data and/or electroanatomical maps.

The reproducible and automated framework processes geometries derived from clinical data.

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ImageAblation also possible during atrial fibrillation?

Together with physicians from the University Heart Center Freiburg Bad Krozingen, we compared whether substrate underlying atrial fibrillation can be localized not only in sinus rhythm but also during atrial fibrillation. The moderate agreement suggests to perform the investigation in sinus rhythm.

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ImageKIT Open Day

The IBT was represented in the tent of the new KIT Center Health Technologies at the Open Day and was happy to welcome many of the about 25,000 visitors about personalized and digital medicine, optical methods in medicine as well as the study course medical engineering.

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ImageIBT at the 2023 SIAM Conference on Dynamical Systems

At the SIAM Conference in Portland, Cristian Barrios Espinosa presented research on advancing machine learning methods in cardiology. Discover more about the diverse applications of dynamical systems in medicine.

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ImageCNN-based classification approach for craniosynostosis published

In cooperation with researchers from the Institute for Medical Informatics and Oral and Maxillofacial Surgery at Heidelberg University Hospital, IBT employees have developed a method to display the 3D geometry of the head as 2D images, which enables a CNN-based classification of head deformities.

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Logo5th international openCARP user meeting in Karlsruhe

From May 24-26, we could welcome around 60 international guests in Karlsruhe for the 5th openCARP user meeting. The fully booked workshop offered training and discussion formats for both new users and experts.

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ImageKlee Award 2023 presented to Dr.-Ing. Laura Anna Unger

The foundation Familie Klee and the German Society for Biomedical Engineering (DGBMT) within the Association for Electrical, Electronic & Information Technologies (VDE) annually give out an award for practically oriented research and development in medical technology. This year’s jury chose Dr.-Ing. Laura Anna Unger and her dissertation on multimodal characterization of the atrial substrate as the winner. Completed with honors at IBT in 2022, the particularly intense collaboration with cardiologists contributed significantly to the success of the project.

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ImageNew Research Associate at the IBT

The Institute of Biomedical Engineering welcomes Mr. Moritz Linder as a new research associate. Moritz Linder completed a master's degree in mechatronics and information technology at the KIT.

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Logo4 more years of research on wave phenomena

The German Research Foundation (DFG) funds the Collaborative Research Center "Wave Phenomena" for 4 more years after intensive review. We are happy to contribute with the use case propagation waves in the heart!

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ImageECG dataset for machine learning published

Classic machine learning methods require the pre-processing of ECG signals. Together with researchers from the University of Oldenburg, PTB Berlin, Aalborg University and Charité Berlin, among others, IBT researchers have recently published annotations of more than 20,000 ECGs. For this, also signal processing algorithms developed at the IBT were used.

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ImageAtrial fibrillation: Technology for diagnosis, monitoring and therapy

The recently published 2nd edition of the special issue of the journal Frontiers in Physiology highlights the latest developments for technology to diagnose, monitor and treat atrial fibrillation. The collection of 16 articles is co-edited by IBT researcher Axel Loewe.

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LogoPersonalizeAF Consortium Meeting at KIT

At the beginning of May, we had the pleasure to welcome about 30 researchers from all over Europe at KIT, who are working on the improvement of diagnosis and therapy of atrial fibrillation in the European PersonalizeAF project. After two days of "Career Opportunities Workshop" for the 15 PhD students, the focus of the last two days was on the exchange of latest research results.

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ImageTopological Analysis of 2D Cell Networks

Assessing the radiosensitivity of tumoral cells is of paramount importance for understanding the efficacy of radiotherapy treatments and design the proper dose delivery scheme. In this work we showed that the topology of 2D cancer-cell graphs is influenced by ionizing radiation and can be capture by microscopy mage analysis.

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ImageEHRA Conference 2023

The European Heart Rhythm Association (EHRA) conference took place in Barcelona on April 16-18, 2023 at its 20th anniversary. Our PhD student Patricia Martínez was nominated for a Young Investigator Award in Clinical and Translational Science.

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ImageDeep learning PCNSL

Following our previous Radiomics based study, we tailored a Deep Learning (3D ResNet) to predict the Overall Survival of patients with PCNSL. The aim was to overcome the limitation of feature selection and engineering by self-learning relevant image features. Gradient-weighted class activation mapping was applied to interpret the results.

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To the published article
ImageRadiomics and Machine Learning for prognosis in rare tumors

In collaboration with University Magna Graecia (Italy), Politecnico di Milano (Italy) and our Clinical Partner at San Raffaele Hospital of Milan (Italy), we proved that the prognostic value of radiomics features extracted from MR images of PCNSL patients overcomes the current prediction model based on clinical features. These results pave the way for further investigations on the potential role of image features to drive treatment choice.

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ImageWhat’s the role of pulse timing in cardiac defibrillation?

In collaboration with the Biomedical Physics group at the MPI for Dynamics and Self-Organization, we investigated time series of the success rates for cardiac defibrillation. Using a simplified 2D model for chaotic excitation dynamics, we got some interesting insights, especially for the success of low-energy pulses.

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ImageGordon Research Conference 2023: memories from the space city

Last week the Gordon Research Conference (GRC) on Cardiac Arrhythmia Mechanisms was held in Galveston (Texas, USA). Patricia Martínez and Albert Dasí won first prize in the student poster competition.

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Logo signals for lifePodcast on atrial fibrillation research in Karlsruhe

In the latest episode of the Signals for Life podcast of the German Society for Biomedical Engineering (DGBMT) in the VDE, Laura Unger from IBT and Armin Luik from the Karlsruhe Municipal Hospital present their joint research on atrial fibrillation. Another episode will follow soon!

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Logo The carpentries Software Carpentry Workshop at KIT

On March 29th and 30th 2023, the Institute of Biomedical Engineering is hosting a workshop which aims to teach foundational coding to researchers, open to registration for all KIT members.

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ImageRecommender system for ablation lines of atrial tachycardia

Together with researchers from the Università degli Studi di Milano and the Municipal Hospital Karlsruhe, we present a recommendation system for the ablation treatment of atrial flutter. Based on graph theoretic methods, the optimal configuration of the ablation scars to be applied is automatically determined with the help of optimization algorithms.

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Professor SpadeaNew Professor at IBT

On January 1, 2023, Prof. Maria Francesca Spadea took over the professorship for modeling and simulation in medical technology at the Institute of Biomedical Engineering.

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LOGO Atrial SignalsSpecial Issue Atrial Signals

With the title "Together we are strong! Collaboration between clinicians and engineers as an enabler for better diagnosis and therapy of atrial arrhythmias", a special issue of the journal "Medical & Biological Engineering & Computing" was published that contains works presented at the Atrial Signals conference in Karlsruhe. The editorial furthermore highlights the lifework of Olaf Dössel and Claus Schmitt.

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ImageWhat distinguishes different types of atrial fibrillation?

While good treatment options exist for paroxysmal atrial fibrillation, persistent atrial fibrillation still cannot be treated satisfactorily. Together with researchers from the University Heart Center Freiburg Bad Krozingen, anatomical and functional differences between these two types have now been identified, which may form the basis for future tailored therapeutic approaches.

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LogoCommentary in the Journal of Cardiovascular Electrophysiology

In an invited editorial, Axel Loewe (IBT) and Amir Jadidi (University Heart Center Freiburg Bad Krozingen) discuss the recent article by Boyle et al. in the Journal of Cardiovascular Electrophysiology on predicting the success of pulmonary vein isolation using magnetic resonance imaging.

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ImageFunctional characterization of genetic mutations

Together with researchers from Marburg, Munich, Frankfurt, the effect of a new group of genetic mutations on cardiac electrophysiology was investigated. The study was published open access in the special isse "Molecular Effects of Mutations in Human Genetic Diseases" of the "International Journal of Molecular Sciences".

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ImageComparison of numerical methods to simulate the heart

How do different numerical splitting schemes for solving the monodomain equation of cardiac electrophysiology compare in terms of convergence, accuracy and efficiency? We answer this question collaboratively with mathematicians (CRC 1173 - Wave phenomena) in a study published in the "International Journal of Numerical Methods in Biomedical Engineering".

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ImageUncertainty quantification for ECG simulations

Together with researchers from the PTB in Berlin, we systematically studied the influence of uncertainty in the input parameters of multiscale heart simulations on the resulting ECG. The work is published open access in the journal "Metrology".

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